Video summary
Dr. Mahmoud Ghannoum, a leading expert on the microbiome with over 400 published papers and more than 20,000 citations, introduces the concept of the mycobiome to explain that our internal ecosystem is not solely bacterial but includes fungi, viruses, parasites, and phages living in harmony. He uses an analogy comparing this complex community to a forest or garden beneath the soil, where different organisms interact; when they are in balance, health flourishes, but dysbiosis occurs if bad actors like *Candida* overgrow while beneficial bacteria such as *Lactobacillus* fail to keep them in check. This symbiotic relationship is crucial because our body produces only a fraction of the enzymes needed for digestion; instead, microbes act as a chemical factory that breaks down fiber and other complex carbohydrates into metabolites like short-chain fatty acids, which support immunity and communicate directly with the brain via signaling molecules such as cytokines. The interview highlights significant implications for neurological conditions like autism, where Dr. Ghannoum's recent study of 81 subjects revealed distinct imbalances between autistic children and their healthy siblings involving both bacterial reductions in fiber-digesting species and fungal differences. A critical finding was the presence of elevated biofilms—described as a protective Jell-O-like matrix produced by pathogens like *E. coli*, *Serratia marcescens*, and *Candida tropicalis* that shield themselves from immune attacks while damaging the gut lining, causing malabsorption and inflammation similar to Crohn's disease. Dr. Ghannoum notes that fungi can adjust rapidly within 24 hours in response to diet changes because they thrive on sugar like yeast, whereas bacteria require long-term dietary shifts; however, this rapid adjustment is vital for managing conditions where bad organisms quickly overgrow if fed simple sugars or processed foods. To address these issues, Dr. Ghannoum advocates for a personalized approach moving beyond generic probiotics toward "probiotic 2.0," which involves isolating specific strains capable of performing targeted functions like breaking down fiber to reduce inflammation and produce beneficial metabolites. He suggests that within the next five years, science will likely provide tailored microbial cocktails based on individual fecal samples rather than relying solely on full fecal microbiota transplants (FMT), though FMT has shown remarkable success in treating *C. diff* infections. His ideal diet emphasizes whole foods low in sugar and saturated fats, rich in mono- and polyunsaturated fats from plants, fish, chicken, cruciferous vegetables for antioxidants, resistant starches to feed good bacteria, and specific items like garlic which he studied extensively after a chance encounter with colleagues in Kuwait led him to publish three papers on its anti-*Candida* properties. Dr. Ghannoum shares his personal story of fleeing the Iraqi invasion while pregnant with his third child, losing his job at Kuwait University overnight but finding refuge and new opportunities through the kindness of strangers who helped secure visas for a conference in England before he eventually moved to the US. This narrative underscores his belief that human nature is inherently good and serves as an introduction to his book available on *totalgutprogram.com* or via Amazon, where he details how cutting processed foods can prevent pro-inflammatory bacteria from thriving. He concludes by emphasizing that while diet changes take months to stabilize a microbiome, the immediate goal should be reducing stressors like sugar intake to starve harmful fungi and fostering an environment where beneficial organisms can restore balance, ultimately influencing mood through neurotransmitter regulation and immune modulation via metabolites produced in this microscopic garden.
Read the full video transcript
The idea that
going through the birth canal is really
building your microbiome is becoming
clear because a lot of the time people
born with
cesarean sections, for example, they
don't have the same microbiome as those
that are born natural way.
Hey everybody, I hope you enjoyed this
episode brought to you by our sponsors
at Blinkist.
Everybody, welcome to Health Theory.
Today's guest is Dr. Mahmoud Ghannoum,
considered one of the world's leading
experts on the microbiome. He's
published an astounding 400 scientific
papers and has been cited by more than
20,000
different papers and other scientists.
His work is so foundational to our
understanding of the microbiome that he
actually coined the term mycobiome,
which is probably the perfect place for
us to start. So, Dr. Ghannoum, please
walk people through exactly what the
mycobiome is and how it's different or a
piece of the microbiome. I think that'd
be really helpful.
Yeah, first of all, I'd like to thank
you for having me. It's a great
pleasure. So, the mycobiome, you know,
the study of fungus it's mycology.
That's why we say mycobiome, which means
it's the myc- fungal community that
lives in our body. We know that we have
microbes in our skin, in our gut, in our
mouth, all over our body.
People used to think it's all bacteria.
And really, they used to use the term
microbiome to refer to bacteria, but in
fact, in addition to the bacterial
community, we have fungal community, we
have viruses, we have parasites. So, the
fungus there, we call it the mycobiome.
Yeah, this is something you don't hear a
lot of people talk about, but you've got
obviously microbes, you've got fungi,
you've got
phages, which I know virtually nothing
about, and you've got viruses, which
sound bad. So, it'd be really
interesting to to begin to understand
what role each of them play, how they're
working in harmony, and then obviously
we'll get into dysbiosis, where it all
goes wrong, and then be great to talk
about how we, you know, get ourselves
into an ideal state.
Yeah. I think you bring really very
important point, because people
sometimes think that these microbes
living in our gut, they live alone.
In fact, they are like in a sandbox,
where kids come together and they start
to play. So, that's exactly what happens
between bacteria and fungus. They come,
work together to our good or our bad.
When they are in harmony,
we have good health. While if they
become fighting together in a way, then
you have a number of health issues and
conditions. So, in a way, we need to
look at the mycobiome as totality,
because all of these organisms, like a
garden, they live together there, and
they interact, and as I mentioned, when
they are in a good uh
good friendship, good you can get along
with people, you help us, and if not, we
are in trouble.
Yeah, so 7 ish years ago, let's say, I
didn't I didn't even know the word
microbiome. I'd never heard of it. I had
no sense of what it was, and then my
wife went through a very profound um
state of dysbiosis. Of course, we didn't
know what it was. We didn't know it was
dysbiosis. It was really crazy. And
through all of this, um it was really
hard to wrap my head around what's going
on. And I think that uh an analogy
perhaps that will help people enter this
is
once you realize that a forest, like a
real forest, is below the ground
communicating and sharing resources and
withholding resources, treating their
own offspring one way, um responding to
something maybe a far afield in the
forest, um like a a fungal overgrowth or
something, by sending sort of toxins
that way. When I started hearing about
that, it's easy for me to understand it
at that macro level where I can imagine
the root system, I can imagine the
biology of it, if that makes sense. And
when I started thinking about, okay, in
our gut it's happening at at a
microscopic level, but is the analogy of
the forest communicating under the soil,
is that pretty accurate for what's going
on in our gut?
I really like that analogy. I tried to
sometimes use the garden in our
backyard, but it's exactly the same
because if you think about it, as you
said,
we see that bacteria and fungus, they
help the roots of a of a plant, which
really allows it to to have more
nutrients and make it grow and give us
all the shade we need. Okay? So So
that's the same exactly what happened in
our gut.
These organisms, they work together.
And there are beneficial organisms, such
as, let's say, in bacteria,
lactobacillus. And there are bad
organisms, and for this example, I'm
going to give you the candida, which is
a fungus.
The good thing about lactobacillus, it
keeps candida under control. Okay? So
that's why what we would like to do in
the garden or in the forest, for that
matter, is try to encourage the growth
of the good
microbes and try to inhibit the bad
microbes. Otherwise, we'll start to have
rust and smut and other plant diseases
which you see in the forest.
All right. So, I want to keep going with
this analogy because one thing I found
in my life is once I can imagine the
process, the biology of it, I can begin
to make far wiser choices because I
understand the chain of cause and
effect. So, I'd really like to
understand better
at a simplified level, if you had to
assign percentages when we're digesting
food, how much of it is the body itself
is producing enzymes or whatever, and
how much of it is the
the garden or the forest of our
bacteria,
fungi, phages, viruses, like that
interplay there working together. So,
that
if I had to just swing a guess, I would
say we're probably
an 80/20 or a 90/10 split where your
body's doing really very little and then
the the garden is doing the rest. Is
that pretty accurate?
You know, in a way, it depends of what
you on what you are defining. If we are
talking about, let's say we eat
something, okay, such as sugar, for
example. Our body try to break it down
and this sort of thing. However, the
microbes, such as fungus, start to use
it and overgrow. But really, when you
think about it, what's nice about the
bacteria and the fungus in our body is
that
let's say we take you eat a fiber
because I always like to encourage the
growth of good bacteria and they love
fiber and they break it down. Our body
does not break it down. So, it goes
through our intestine down to the large
intestine and then start breaking it
down. And what they do, they produce
these metabolites. I'll give you an
example, short-chain fatty acids. It's
basically fatty acids with short chains,
as it says, you know? And those have
been shown to play very important role
in supporting our immunity, for example.
Also, by breaking down this this food
and producing some of these metabolites,
there are a a large number, as you can
imagine, of products are produced, you
know? They also can communicate with our
brain.
Remember, bacteria also can produce
vitamins. So, in a way, we have a
factory of chemical factory, in fact,
where we produce all these compounds.
Some of them will affect our immune
system. Some of them will help our
nutrition, like vitamins. Obviously,
this is good and nutrient.
Now,
if we look at these organisms, when they
are in harmony, they really are doing
good stuff together, okay? And let me
give you an example about this. For when
we eat
a
complex carb, let's say, candida breaks
it down. And then, what it gives, it
gives a byproduct. And this byproduct it
used by bacteria to produce other
byproducts, which can It's really
complete the circle where candida can
use. So, they work together to for their
benefit, and also our benefit when they
are good guys.
Yeah, that that's me really begins to
clarify why it's so important to
get that harmony right between the
different elements of the microbiome,
because once you understand that what
you're really uptaking into the body is
the byproduct of them their balance,
right? So, who's in there? So, if one
guy is producing something that is not
helpful for us and the other species is
producing vitamins for instance. It's
like, okay, well clearly if I have bad
producer over here and he's
proliferating
and I've got my vitamin producer over
here and they don't exist then or
they're you know greatly diminished
through whatever high stress antibiotic
use, you know, whatever bad diet,
whatever the case may be then it's like
well the metabolites that are being
produced by the chemical factory like
you were talking about they're producing
the wrong thing. And so now I'm getting
sick. Now I'm fatigued. Now I have mood
disorder. And a lot of what's being
produced is
what I've heard referred to as a
signaling molecule. So it in
understanding all of that for me it was
like, okay, now I can picture why I need
to eat certain things, why I need to
avoid certain things because it comes
down to what is the
the forest or the garden, what is it
communicating? So if it's creating not
just building blocks, it's also creating
communication elements that say do this,
do that, turn this on, turn that off.
It's like, whoa, this becomes a very
complicated
um
symphony.
Exactly. I think you bring out a very
important point which is the
communication.
Before we always thought that our brain
tells us what to do. Now with the
microbiome, we know there is
bidirectional communication. It's
two-way street here. Our brain can tell
our gut, but our gut also can tell our
brain and where they influence each
other. Okay? So in a way that's what's
happening. It's not only just producing
as you say product is the signaling
which you mentioned. There are of course
some ways where we have cytokines which
some of the immune um
elements like anti-inflammatory
cytokines. They are substances that can
either be anti-inflammatory, which means
they help our body to fight
inflammation, and some of them when for
example an organism that produce IL-6 or
interleukin-6. This is a bad cytokine
because it's associated a lot of the
time with inflammation.
What I would like to have in my body, I
want to feed the good microbes so that
they grow and they produce effect on our
immune system so that we have more
anti-inflammatory
cytokines.
I don't want to have something like for
example some organism that can produce I
mentioned remember
interleukin-6,
which is a bad guy because when this
happens it could affect our brain, we'll
start to producing more cortisol also,
and of course having more cortisol,
we're going to have more depression for
example.
So, it's really I like your view is that
it's a complex. It is not a simple way.
It's like biology. Biology is always
complex, you know.
Yeah, so um let's start at at birth.
You've gotten into some really
interesting stuff around um autism. So,
I encountered not too long ago the idea
that the the microbiome begins to get
populated at birth by going through the
vaginal canal and that becomes sort of
the the seeding of this garden. One, I'd
love to understand what the research is
showing about autism and its link to the
microbiome. And then also, what is that
chain of events? How do we go from
when we're a fetus, is there any
microbiome or is it literally zero? And
then it becomes populated um as you go
through the vaginal canal. How does that
work?
Yeah. I think before we used to be to
think it's zero, but now there are
studies to show No, even when you are
there, there is some microbes. And
obviously, it is not a mature
microbiome. You know what I mean? As you
come out from the birth canal, you get
more. And then, as you are fed, for
example, breastfeeding and whatever, you
add more more variety. And the first few
months, you are really building that
microbiome. But, then after, let's say,
6 months or something, it becomes more
and more stable than when we first
start. And the idea that
going through the birth canal is really
building your microbiome is becoming
clear because a lot of the time people
born with cesarean sections, for
example, they don't have the same
microbiome as those that are born
natural way.
So, it's my understanding that the rate
of autism jumps something like 30% uh if
you were born via C-section. Is that
accurate?
You know, you are touching on an area
which I just completed a very big study.
So, what we did, we wanted to look at uh
autistic kids to try to see is there a
difference in between their microbiome
as well as their siblings compared to
their sibling siblings. So, we had about
81 subjects. Mainly, 50 some autistic
and the rest their siblings. And we
really compared their microbiome both
not only bacteria, but also fungus.
Because I You know, I'm a fungi. I like
to look at fungus.
So, we found that there is
imbalance between the sibling who are
healthy and those with autistic. And we
found really very interesting
uh
data which I recently presented at the
International Center for autism
research, where we found, for example,
the bacteria in autistic kids, they have
a reduction in one particular, which is
important in breaking down fibers.
Okay? And that's why most probably these
kids really are very fussy about what
eating, and they have difficulty
gastrointestinal issues, like 40% up to
40% autistic kids have GI issues or
gastrointestinal issues. Okay? We also
found other organisms,
uh not only with bacteria, but with
fungus that are different as well. So,
now what we are trying to do is try to
understand how we can balance these
organisms. Okay? And it's amazing uh
both bacteria and fungus play a role in
these autistic kids. And one factor,
which again I'm now currently doing, is
we found a bacteria that is able to
produce biofilms. Biofilms is like the
plaque in our teeth is a biofilm. We
have what we call digestive plaque. But
we found this this organism really to be
also elevated in these
uh autistic kids, you know?
That's interesting. I think you're going
to have to explain to people why um
biofilms are so potentially dangerous.
Um because you want to talk about
something that scares me, biofilms scare
me.
So, let me tell I did a study in 2016.
I looked at Crohn's disease patients.
And we found that they have imbalance in
both bacteria and fungus. We found that
they have an elevated level of E. coli,
Escherichia coli. They have Serratia
marcescens, which is also pathogenic
bacteria. At the same time, we found
that there is an increase of Candida
tropicalis. And guess what? We
we are lucky because we have in our lab
30,000 different organisms. So, we are
able to go get those and put them
together. And guess what they did? They
formed a big biofilm.
So, what is the issue with biofilms in
our gut? It's similar to plaque in our
teeth. But in in the gut, when they form
this biofilm, it's like a Jell-O. Just
to make people visualize what it is.
It's like a Jell-O. And inside this
Jell-O, we have little M&M's or little
raisins, for example. So, these raisins
and M&M's are the microbes. Whereas, the
Jell-O is what they produce. They
produce a material called matrix. Okay?
And this matrix, as if it is like really
you can imagine it is very difficult to
get into the raisins because of this
matrix. You have to dig in and and take
them. So, that's what happens in our
gut. They go and on the epithelial cell
lining, which you mentioned, they form a
thick biofilm.
So, you you ask me, "So, what does that
mean?" What it means, it covers First of
all, when they are living, these bad
organisms, E. coli, Serratia, as well as
Candida living there, they become
protected against antimicrobial agents,
against our immune system. They are
really bad guys. They working together
to start damage our
lining, you know, epithelial cell
lining. And then, of course, when they
do that, they we are going to have
gastrointestinal issues, which we, of
course, Crohn's disease is a excellent
example. But in addition to causing this
harm, also by covering the epithelial
epithelial lining, we will not have
nutrient absorption as well as an
efficient way. So, we will start to
have, you know, less nutrients and
whatever and all the associated factors.
So, you can eat but essentially starve
to death.
Exactly. Exactly.
Yeah, that that was what was happening
to my wife. I can't say whether it was
um due to biofilm or not, but man, it
was gnarly. Like, she was eating and she
looked malnourished. Her hair started
falling out. Her nails were brittle. It
was crazy. It was super scary. And this
was again, this was back I had to learn
about the microbiome specifically
because of what she was going through.
So, it just felt so impossibly
complicated. Now, one thing um cuz she
has improved dramatically.
Great.
But the thing that I will say I keep in
my back pocket because she isn't like a
teenager who can eat whatever they want.
Like, she has to be
really careful.
Careful.
Tells me that she still is in sort of a
compromised situation. Her garden too
many things have died. There's not
enough diversity.
Yes.
The thing I have in my back pocket is uh
FMT. So, the first time I heard about
it, I could not believe that fecal
microbial transplant was real, that we
were quite literally taking the
excrement out of one human and putting
it into another. Uh that just struck me
as so terrifying. Um but it it has shown
some real promise.
Yes.
Where is the state of FMT?
How often do you recommend people to try
it in um a clinical setting where
they're actually helping somebody?
Yeah.
I think the most really valuable data we
got from uh FMT is in uh C. diff. C.
diff is C, you know, the infection in
the gut. And it was amazing. The first
time I was in a meeting, scientific
meeting, I was listening to a professor
from the of Virginia and he talked about
he did 76
patients. He transferred them with fecal
transplant from donors who are healthy
and lo and behold, they had a huge
success, you know? So, to me that was
really a good proof that by getting the
right microbiome, you are going to get
rid of those issues. Also,
other studies with respect to the FMT is
that you know, a lot of studies in
animals where for example, they took
some
fecal transplant from a slim mouse and
gave it to an obese one and they were
able the to become the obese become thin
again, you know what I mean? So, this is
fantastic. Now, you asked me a question,
where are we with that? And now the
trend is can we get
a subset of organisms that we know like
like probiotic type of organisms that we
know they are going to rebalance our gut
and help us. And I would say in the
coming few years that would be more the
trend than the FMT.
Meaning we're going to go in isolate the
balanced grouping of microbes, the whole
thing, the microbes, the fungi, the
phages, the viruses into something
that's pure and isolatable and we're
going to give them to people, is that
Exactly, exactly.
And how do we place them in? So, if FMT,
I've heard two ways. One encapsulated
meaning you actually swallow the tablet
and then two basically like an endoscopy
where you go in and and sort of I would
assume do they start all the way up at
the top of the small intestines and
Yeah, I yeah. What I think is going to
happen is
a capsule form.
But it's not going to have all the
organisms that they are going to
that we find in in somebody's who is
healthy.
What we are going to do is we are going
to identify what are the most important
organisms that will be able to maintain
if number one to rebalance and then
maintain our microbiome.
So, what's for people that don't
understand like the difference between
well, that just sounds like a probiotic.
So, what's the difference between what
you're talking about and a probiotic?
Even I'm curious because once it is just
the isolated living organisms that
sounds to me exactly like a probiotic.
So, what what's the difference and why?
Cuz the big thing I hear the downside of
probiotics is that they don't survive
digestion. So, either they don't survive
encapsulation, so they're already dead
by the time you take it or if it
survives encapsulation, it doesn't
survive digestion and it gets killed in
the stomach and doesn't make it to the
actual intestines. So,
what are the complications there and and
So, there are two topics.
There are two topics.
One topic is
what sort of mix we are going to have.
First of all, you are absolutely right.
They are like probiotics. The difference
the difference is you are going to
select certain probiotic strains that
will do certain functions with the
probiotic
don't do. Before probiotic is a wild
west situation. Really not a lot of
information. Now, the National Institute
of Health for example, is putting what
we call RFA request for applications
from scientist so that they can put
proposals to try to see, okay, are these
probiotics useful? What subset and this
sort of thing. So, I think we are going
to see a better refinement. Even though
they will be after all we call them
probiotic, but they are going to be
selected
strains that helps that will help us in
certain ways. Like for example, I told
you in autistic kids, if they don't
break fiber, I don't want to take any
old probiotic. I want a probiotic that
is able to like a strain that I would
show that is going to break this fiber.
So it's going to be personalized.
it mean personalized and more targeted
to a given situation.
That is very interesting. So now let's
talk about what would make of that
targeting. So my wife's microbiome is
decimated. So what would you give her?
Would you give it based on the fact that
she's Mediterranean or what? Cuz you've
said that people break into basically
three camps. Healthy people fall into
three types of microbiomes. It isn't It
isn't just every person is completely
individualized. There is individuality,
but for the most part people fall into
roughly three camps. Would it be just
figuring out which of those three camps
she should be in? And how do you decide
that?
This is a really very good question.
Why? Because Okay, how do we know?
One way now which was advancement of
science and next generation sequencing,
we can take a fecal sample and
characterize it. We can actually make a
profile of a given person. And you are
absolutely right. In our studies we
showed that there are at least three
different profiles, but
with and without fungus. Like some the
same profile could be with fungus or
without fungus. So you have six in
total. And so when you for example, with
your wife, if we can take a fecal
sample, we can analyze that and based on
that
you will be able to see what sort of
dysbiosis, okay, or what sort of
imbalance there. And then based on this,
you need to start giving recommendation
nutritional nutritional recommendations
that will improve the growth of this
this guy, which we don't have. Like for
example, if you have proteobacteria,
which is pro-inflammatory or it's a red
flag for inflammation, I want to give
the person fiber. I want to give them
vitamin D3 because this have been shown
to reduce that. So you start to make, as
you said, personalized approaches to the
to rebalance your gut.
So I want to go a little deeper on the
timeline for the actual personalized
sort of probiotic 2.0 or 3.0
where we get the fecal sample, we
identify where they're at, we identify
and and I'm not sure how, but we
identify what of the roughly six groups
they're going to they need to fall into,
and then we create this cocktail for
them that they're going to take. And
look, trust me when I say I buy into
diet 100%, I buy into lifestyle 100%,
um but you've talked about the fact that
diet and lifestyle is a change measured
in months or even years,
whereas the microbiome, the fungi, can
be adjusted in 24 hours.
And I'm also hopeful that with this
cocktail that you're talking about, what
what we'll call probiotics 2.0, um
is
faster, right? But I really want to
understand
are we are we 10 years away from
probiotics 2.0, or we 10 months away?
I don't think it's 10 months away, but I
don't think it's going to be 10 years. I
really believe within the
5-year period, we should be able to get
them all. Look,
if you think about the and our
understanding of the microbiome is just
been maybe just over 10 year 10-15
years, okay? So, the first stage we just
wanted to understand what is there.
Now, we know also they cause issues.
Now, we are entering into the future
which is the more exciting and will be
more really relevant to a situation like
your wife where we are trying to
understand, "Okay, how can we balance
it? What sort of strain do we need?" And
I am a you know, I am an optimistic
person, okay? And
because of this, I think we will reach
there within the coming
5 years. I I'm sure.
So, going back to the hot button issue
of autism,
let's talk about is anybody doing human
experimentation with autism and FMT and
if so, what are the results?
You know, this there are a number of
companies that are starting to look at
autism. And what they are trying to do
is trying to see a subset of strains
that going to work against against
against them. But, they are in clinical
trials. They are not completed, but I
think again, I expect within the coming
3 years we will see hopefully
some some of these
strains are going to work.
And when you say work, do you think that
you can have a
partial reduction in symptoms, a total
reversal of symptoms? Do you have to
catch it by a certain age or does the
brain actually develop differently?
What do you think that looks like?
I think like for me where I am going
with autism, I can tell you because I've
been thinking, "Okay, how can we do a
clinical trial
so that at the end of it we learn
something which going to help these
kids.
And I would like to focus on the
gastrointestinal
issues.
What issues they have? They have
constipation, they have bloating, they
have Can we find a set of organisms that
are able going to help them number one,
digest the food better, number two,
rebalance the gut. Okay? And what I
would like to do, I like two things to
do. Number one, I really hope we can get
a strain
that is able to break down fiber. Also,
I hope that we have a a sub It's not
going to be one.
Most probably a handful, not not too
many as well,
uh which can uh help them with respect
to their digestive symptoms. So, it it
has to work this way, otherwise it's
really not not worth it.
Has anybody looked at um so, obviously
the microbiome is wildly involved in
neurotransmitters.
Um
has anybody looked at autism and the
neurotransmitters? So, if there's a
correlation or causation between the
inability to break down fiber and
neurotransmitters, like I know that um
short-chain fatty acids, for instance,
if if I'm understanding correctly,
certainly lower inflammation, which can
have tremendous impact on mood. Um so,
have people looked at neurotransmitters
in autism and and tried to link that to
the microbiome?
You know, in autism, it's not as
advanced, but I can tell you in Crohn's
disease patients, people are looking at
it. And in this regard, I was very happy
I got a a National Institute of uh
Health Grant and I actually got a grant
to study oral uh interactions between
bacteria and fungus in Crohn's disease.
And And what we are doing? Apart from
looking at the organisms, we also
looking at the metabolomics, which is
the metabolites production. And what we
are hoping is we are going to go into
identify compounds that are, say,
elevated in these in these patients
compared to their
control or healthy people. And then that
is going to give you a large number of
molecules to look at. And that And some
of them may have neurotransmitter
effect. Some of them will have
inflammatory effect and so and so forth.
Like in our study, for example, just to
make it put it into perspective, when we
looked at organisms that when they come
together that are pathogenic, they we
found 299
metabolites
detected.
Wow.
Out of these, we found eight that are
statistically significant.
So now we are going to focus on these
eight.
Now,
do I know what they are what they do?
I hope by the end of the 5 years.
But that's where, you know, definitely
people are looking at the metabolites
and I think this is the second wave.
That's where I believe Now we are going
to move in that direction.
So help me understand the
um
the microbiome in general is at a
microbial perspective, anyway, very hard
to um adjust. But fungi can be adjusted
In your book you say in 24 hours.
Yes.
One, why is it so much easier to adjust?
And then two, what do we hope or what
actually comes out of that adjustment?
Yeah.
I think
when I said this, there was a study
before where you looked at what you call
by Dr. Hoffman, where he looked at
short-term diet and long-term diet. And
when he compared the bacteria and the
fungus, the bacterial community and the
fungal community, he found that the
fungi is a short-term diet, which means
in a short time it can change, okay?
Whereas the bacteria, it is more
sustainable, it requires long-term diet.
And that's really where the first idea
came to us. The other thing, why is
that? Especially if we eat sugar, for
example, fungi and the bad guys love
sugar and they grow very fast. In a way,
they are, you know, they they are unlike
other molds such as aspergillus or
penicillium, which they take or even
dermatophytes, the organisms that infect
our nails and hair, nails, and skin,
they take very long time to grow,
whereas candida is very fast, it's like
bacteria anyway. So, that could account
for how very quickly you can populate
that or you can starve them as well at
the same time.
Very interesting. So, as we make the
adjustments, we start eating the right
diet, we lower our stress, we start
working on all that, um
what like the microbiome, the the fungus
role, what does that control?
I think first of all, there are studies
that have shown that the
microbiome play a role in our immunity,
for example. And I
remember we gave an example where they
or
Through metabo- through they influence
the ability or to secrete more
cytokines. They affect the immune cells
to secrete more cytokines. Also, the
fungi, if they are overgrow
in this biofilm which I mentioned
before, you know, it's so interesting
because if you look at candida when it
is sort of in a way harmless, it's a
yeast form. It's like oval, little like
we know with baker's yeast, okay?
Whereas when it start to grow, it forms
what you call the hyphae. It's like
threads. It's like little
thin threads, okay? And these what they
do, they start to break down our gut
lining. And once you have this breakdown
of the gut lining, you are going to have
leaky gut. You are going to have a lot a
lot of issues.
So, so that's where Candida, if it
overgrows, is not a good idea. However,
I don't want people to go
really so nervous about it. 50% of us
have Candida in our gut, you know? I did
a study once with my students many years
ago, where I wanted to see do they carry
Candida in their mouth? So, I said,
"Okay, guys, let's do this." This is
before I became enlightened about the
diet. So, I said, "Listen, I need to
take a swab to culture Candida and I'll
give you donuts, okay?"
And you know, students will will do
that. For donuts, they'll do it. So,
anyway, what what happened, we found
between
50 to 70%
of the students has Candida. As long as
it is at low level,
it's fine.
The problem is when it overgrows. In
fact, when it is at low at low level, as
I mentioned before, it could help help
us with fermentation, food food
breakdown, and this sort of thing.
And the reason that the donut is ironic
is that Candida is able to consume that
sugar and grow and proliferate.
Yes.
That's that makes a lot of sense. So,
that brings us into what are your diet
and lifestyle recommendations? So, for
the person that they they have some
level of dysbiosis, which I would say in
a modern context most people probably
do.
What what does as close to perfect as
possible look like?
Now, I think uh I want to buy it. It has
it's a whole food, natural food. It has
low in sugar, obviously, because as we
were been talking about, we need to have
uh mono- and polyunsaturated fats. We
don't want We want to avoid the
saturated fats. You need some good lean
proteins, for example, uh from plants,
also from chicken, from fish is really
uh great. I need to have some food like
cruciferous vegetables, for example, for
anti-inflammatory, antioxidant. These
are really, really good. And also, we
need to have fibers, such as
a resistant starch is very good. Why?
Because I want to support the growth of
the good bacteria. Because those good
guys is like policemen, they keep the
other bad guys under control. So, that's
uh that's really from the dietary point
of view.
All right, so just walk me through
you're very specific in your book about
what people should eat. Um what would an
ideal day look like? What am I having
for breakfast? Am I intermittent
fasting? Um am I, you know, the eating
one meal a day, three meals a day, eight
meals a day? Like, what does that look
like?
Let me Let me tell you what I do.
I really uh now uh in the morning, for
example, I like oatmeal very much. I
love uh a little bit of honey, what not
too much because of the sugar, but it's
okay. Uh it's better than refined sugar.
So, my breakfast usually is uh this way.
It's uh
uh uh
oatmeal,
uh
berries, raisins. I have some prunes. I
I really like like those. And in the
weekend, I enjoy uh having uh eggs like
omelet, vegetable omelet, and this sort
of thing. Now, during the day when I'm
at at work, I like to have you know,
snacks. I love nuts, especially
pistachio. And pistachio, by the way,
have been shown to be fantastic with
respect to the micro microbiome, better
than almond. Even though almonds are
good, but pistachios are much better. At
lunchtime,
I tend to have a salad. And you know,
I'm from the Mediterranean myself, like
your your your wife. And I love I love
salad. And I don't want salad to be too
complex. People sometimes add too many
ingredients to it. I like to be simple,
you know, tomato, a cucumber, spring
onions, of course, olive oil, you know,
and as well as garlic. Garlic, it is
fantastic. And I can tell you, I
published some work on garlic. You know,
it's a very interesting story. If you
don't mind, I'll tell you that. Okay.
No, please. I I know the story. It's
amazing. You know,
so I was working in Kuwait for many many
years. I was professor at Kuwait
University
before I came to the US. And this
Kuwaiti faculty, a friend of mine, he
every morning he comes to me, "You have
to study garlic." I said, "Go away. I
don't want to study garlic." Every day
he said, "But then, you know, he's my
friend." I said, "Okay, I'll study
garlic." So, I did. And I published
three papers on garlic. You know, and
this is what brought me to the US, where
they invited me to give a talk on
in a conference called First Congress on
the Biology of Garlic. And they wanted
me to talk about Candida. Of course, I I
I was studying against Candida. And
garlic is a fantastic thing. I'm biased
in more than one way.
So, what uh what happened? I was in
England with my family, you know, even
though we work in
I I'm at Kuwait University,
I I came to England. My wife is English,
so we go to England every summer. And
then Saddam Hussein decided to occupy
Kuwait. So, overnight I lost my job. And
oh my god, we were just 1 week of going
back to Kuwait, you know, to to work.
And
the luckily I already had my visa
for the meeting. And they I called them.
I said, "Listen, send me the ticket to
England." And that's how I came to the
US. And of course, I had
a kind man help me where
gave me, you know, changed my ticket and
this sort of thing. And then I ended up
getting two jobs
in one evening. Again, honestly, I know
these days we are all
a lot of anxiety and whatever, but this
tells you a fantastic thing about the
US, how people help and how other human
beings help you make a lot of difference
in your life. And that's where my story
with garlic.
Yeah, it's a it's a really beautiful
story, man. I I've heard you talk about
it a few times and it's super touching
that the the guy was a travel agent, if
I'm not mistaken.
Yes.
And you'd asked him for help because you
were in DC for the conference, but you
now had to stay an extra week, but you
had no money. This is, you know, before
PayPal and things like that, so there's
no way for you to get a hold of any
money. So, you go to this travel agent
who you've never met ever in your life
and say, "Look, I have a friend in
Milwaukee, but I have to get back to DC
if I'm going to have any hope of getting
a job. So, can you give me give me a
ticket to Milwaukee and back to DC?"
Which he does out of his own pocket.
It's unbelievable.
Yeah, it's really a beautiful story. And
I I know, if I'm not mistaken now, you
have a scholarship in his name
to to help pay that forward which I
think is really exciting.
Yes. Yes. We We went and we met with his
family. Unfortunately, he passed away
February of last year. It's a year ago
now and it is really sad. But I tell you
when we saw his family, it was fantastic
and it made me feel so happy. And now we
hope as you say we pay it forward to
help somebody else. Because you know
like
I don't know if I would do it now, but
you don't know when you are desperate
about something. I just want to help
myself. Listen, you are a black guy. You
have to help me. He said, "You don't
tell me what the hell What the hell is
this guy talking about?"
I said, "Listen, I need help. I you
know." And honest to God, he just did
it. It's amazing, you know. But
you know, this is the good part of the
human nature which we always need to
think about and celebrate.
You know.
I love that. And when you say coming to
America, you needed be more opportunity
and it didn't matter who you were. Just
mattered the results that you were able
to to get here in America. And
your life is such extraordinary proof of
that. You know, one man's kindness is
turned into
an exceptional business.
Just as I said in the intro, the amount
of times that you've been cited 400
papers, 20,000 citations, the the
contributions that you've made off of
that act of kindness is is really pretty
extraordinary.
I tell you I tell you that kindness not
only changed my life. My family's now
alive completely, you know. I We came
when we were in England, I had a little
boy 5 months. My son, my eldest son
Hafiz, he was 10 year and my daughter
Emma was 7 years. Now they are all grown
up. They are all doing well. So you
know, it's amazing.
Dr. G, man, thank you so much. This has
really been amazing. I want to ask you,
um if people want to connect with you,
if they want to get your book, um where
do they go? What's the best place?
It's uh First of all, they can go to
doctormicrobiome.com,
d r microbiome.com.
Uh that's we have a site where we are
helping people to do some of the stuff.
Also, totalgutprogram.com, and also it's
in Amazon, Barnes & Noble, and all other
places. So, I really, really enjoyed
talking to you.
This is amazing, man. If you were going
to have people make one change that
would have the biggest positive impact
on their health, what change would you
have them make?
You know, I really would try like to
cut some of processed food. If you can,
cut some of the processed food because
that's where a lot of the food that can
help the pro-inflammatory bacteria grow
in our gut. So, just veer a little bit
to more natural food. Eat, you know, as
I mentioned, I'm from the Mediterranean.
Eat some vegetables, eat fruits, and
fish, my friend, is fantastic.
Amazing. Dr. G, thank you guys so much.
Thank you so much. And guys, man, check
him out. He's amazing. There's a reason
he's been cited as much as he's been
cited. Uh just an extraordinary thinker.
He's doing amazing research. Definitely
somebody to watch. If you haven't
already, be sure to subscribe. And until
next time, my friends, be legendary.
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