Video summary
The Protein Production Sweden (PPS) initiative serves as a national distributed research infrastructure designed to support researchers across academia and industry by providing high-quality recombinant proteins for diverse projects. Established in 2022 with funding extending through 2030, PPS unites five different universities in Sweden into four geographical nodes, offering open access to various expression systems including *E. coli*, yeast (*Pichia pastoris*), insect cells, mammalian cells (CHO and HEK), plant cells, and cell-free platforms. This collaborative network addresses the limitations of individual labs by combining complementary technologies; for instance, while *E. coli* offers speed and cost-efficiency for simple proteins, mammalian and yeast systems are utilized for complex glycoproteins that require specific post-translational modifications or lack endotoxin contamination. The infrastructure is managed through a centralized portal where researchers submit project requests, allowing a management group to route each project to the most suitable platform based on the protein's specific properties and required expression system.
To ensure the delivered proteins meet rigorous standards, PPS implements a comprehensive workflow that includes design, production, purification, and strict quality control at every node. The quality assurance process focuses on three critical parameters: purity, verified via Coomassie-stained gels; identity, confirmed through mass spectrometry of intact proteins or tryptic digests; and conformational integrity, assessed using size exclusion chromatography to ensure the protein is monodisperse and not aggregated. Beyond structural biology applications like crystallization and cryo-EM, these proteins are extensively used for drug and vaccine development, antibody binding assays, ELISA diagnostics, and cellular experiments. Since its inception, PPS has successfully completed over 1,400 projects, delivering more than 1,400 protein batches, with a growing number of requests coming from international partners and commercial entities, demonstrating the expanding reach and utility of this national resource.
The presentation highlights two specific virology projects that illustrate the versatility of the PPS platforms. The first involved the production of the Ebola virus glycoprotein (GP), a large, extensively glycosylated protein produced in HEK293 cells via transient transfection. Due to the complexity of its structure and glycosylation patterns, the purification process revealed multiple forms of the protein, including trimers, monomers, and non-glycosylated variants, which were analyzed using advanced SEC-MALS techniques to determine molecular weight and carbohydrate content. This specific protein was subsequently delivered for an EU project aimed at developing protease cleavage inhibitors. The second example focused on the Tick-Borne Encephalitis virus (TBE), where researchers needed an alternative antigen for serological diagnostics because the standard envelope protein was not always effective. PPS produced the NS1 non-structural protein in HEK293 cells, which was then used to identify specific antibody epitopes and validate its efficacy in detecting IgG and IgM antibodies in patient serum and cerebrospinal fluid, leading to a recommendation for its inclusion in routine TBE diagnostics.
In conclusion, Malin Bäckström emphasizes that PPS aims to remain the preferred provider of proteins by continuously improving workflows and maintaining high-quality standards that save time for researchers who may lack the capacity or expertise to produce such proteins in-house. The facility not only supports Swedish institutions but also actively collaborates with international partners, leveraging a diverse array of expression systems to solve complex biological challenges. Whether producing simple antigens for screening or complex glycoproteins for structural studies, the integrated network ensures that researchers can focus on their core scientific questions while relying on a robust, flexible, and high-capacity infrastructure to generate the essential reagents needed for advancing virology and biomedical research.
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Hey, I think we slowly start.
So, it's my pleasure to introduce now, I
think, the fourth
webinar that we have in the Panda theme
series.
And today it's about enabling
technologies. So, how can we get help
to prepare the samples that we need for
the experiments?
And today's speaker will be Malin
Backstrom, who's from Gothenburg
University,
and who is also the uh director of the
national infrastructure for protein
production here in Sweden.
So, as I understand, Malin received a
degree in biochemistry and then did her
PhD in medical microbiology. I guess
everything in Gothenburg.
But then also spent some time in
Cambridge.
And for many years then worked with
Musse in
uh biology at the University of
Gothenburg. But then you focused very
much
on service and core facility. And from
2015,
I think, if not even
earlier,
you're driving and leading the platform
at Gothenburg University
that is doing especially expression in
mammalian cells.
But then since 2022,
we also have a national infrastructure
which you are heading.
You are the director. And that's what
you will tell us
about today. And in particular,
as we talked a bit before, a few
examples also what you produced for
virologists and virology projects.
So, with having said that, please,
Malin, go ahead.
>> Mhm, thank you, Wolfgang.
Uh
I will then share my presentation.
Yeah, so thanks a lot for this
introduction and thank you also for
allowing me to speak here today to this
group of people.
Uh
as Wolfgang said, I'm heading the the
national infrastructure protein
production Sweden,
uh which has the purpose of supplying
all researchers with the proteins they
need for many different types of
research projects.
Uh and of course virology is a hot topic
and we believe that many of you also
will need proteins for different things.
So it's a very good idea that Wolfgang
had that we should be should be allowed
to present PPS here
and tell you what we can help you with
in relation to to protein production.
Uh so I will present PPS of course today
and I will also present a little bit of
my own uh
platform core facility at the
Sahlgrenska Sahlgrenska Academy in
Gothenburg. Uh and we are working with
we are we are part of this national
thing with PPS, but we are working with
mammalian protein production.
And at the end I will give you two
examples of projects that we have made
that are related to to different virus
projects.
Okay. So um
Uh to first then I will introduce this
protein production Sweden for you who
have maybe not heard about us before.
We are a national distributed research
infrastructure for protein production
and purification.
We are national, we have national
funding from the research council, but
we are distributed because we are
located not only in one site, but in
actually in five different
universities in Sweden.
So we work with open access for projects
from both academia and industry, both
from Sweden,
but also from other countries.
And we what we found out, I mean, when
we established PPS, we we found out that
we had protein expression platforms at
the different universities in Sweden,
but that we were working with
different expression systems and we
thought that by working together we can
help all researchers,
I mean, in a combined way. So this is
why we wanted to set it up. So we have a
a one one
single infrastructure that the
researchers can turn to and then get
help with production of proteins in the
different expression systems.
And as I said, we have funding from the
research council
and of course also then from the
participating universities.
And this was established in 2022
and at present we have funding until
2030 because we just recently got the
full extension of of our funding.
So what are we? We are several different
protein production platforms
in four different geographical nodes,
but at five different universities.
So if we start here in Gothenburg, where
I am,
we have my unit here, which is the
mammalian protein expression core
facility.
And we are located at the Sahlgrenska
Academy in Gothenburg.
And also in Gothenburg we one platform
which is the Swedish NMR center, then
they make then cell-free expression of
proteins.
And also can do a lot of labeling for
NMR, but also for other things, of
course.
And in Gothenburg, there is also one
platform working with Pichia pastoris,
called the yeast protein production
platform.
So, they they are the three labs that we
have here in Gothenburg.
And then in Lund, we have Wolfgang's
platform, the protein production
platform LP3
who are working with
within PPS, they're working with insect
cell production.
And then we have two labs in Stockholm,
one at KTH
and they are working with mammalian
production also, as we do here in
Gothenburg. So, we have two platforms
for mammalian
cells
within PPS.
And then we have the protein science
facility at the Karolinska Institute,
and they are working with E. coli since
many years. And this is what they
contribute with in this in this context.
And then we have Umeå University who who
have their protein expertise platform
working with E. coli and also
establishing a bit of plant cell
expression. I will come back to that
later.
So, this is all the labs. So, we have
two labs E. coli, two labs working with
mammalian cells, and then the other
ones, one for insect cells, one for
yeast, and one for cell-free production.
So, this is what PPS is.
And I don't know now who who's actually
listening to this webinar, how much
experience you have in protein
production.
But this slide shows that there are many
different steps involved in getting uh
uh good protein of high quality that you
can use for different research
experiments.
So, first of course, uh
you need to um
to uh
look at the the gene. I mean, the
protein that you want to have expressed,
you have to look into the the gene for
that and make the design and see how
should the protein what should be
included, excluded, etc.
And then of course, you have to put it
into the right expression vector so that
you can express it express it in the in
the expression system that you're then
then choosing uh for your specific
protein. Because the reason why we have
so many expression systems is that there
are so many different types of proteins
and they will
have different properties that
will make them well, to be better
produced in in one or the other
expression system. So, this is why we
want to work together and have
complementary systems so that we can be
able to produce many different types of
proteins.
So, when we have designed the vector,
uh decided how the protein should be
made, in what cells, etc., what
expression system, then we make the
actual production. And that could be a
large scale culture
or it could be in when it comes to
cell-free, it could just be in a test
tube.
But the the the actual production step.
And after the production, we also make
purification of the protein and that
could be either from the cell
supernatant or from the broken up cell
pellets depending again on how you
design your experiments.
And then we performs uh
uh
column purifications.
And at the end we also perform some
quality analysis because we have to make
sure that the proteins that we deliver
from PPS are really of good quality.
So we have [clears throat] also included
that in our workflow.
We have a vision
in PPS
that we shall become and remain the
preferred provider of proteins for
research purposes. And that could be for
Swedish Swedish researchers from
academia, public sector and commercial
entities.
So we have now worked together for
almost 5 years and uh
uh we have started to work uh and
established our workflow that we so that
we can work together. But we also uh as
we say here, we also want to remain the
preferred provider. So we still always
have to keep up the good work and make
make proteins of good quality so that
people want to continue uh using us.
Uh we are of course aware that many labs
can also do recombinant protein
production in in their own lab. It
happens quite a lot in many labs.
Uh but we see that we want to help also
the ones who cannot do it themselves. Or
it can also be a time-saving
activity for even for the labs who can
do it themselves. They can even lease it
out to us if they and then they can
focus on the the other steps in the
research project. So we're really
um
Yeah, we want to I mean we we working to
get more and more known. It takes time
of course to get known and we want
people to to to use us and want to
continue to use us also.
So this is a slide of why of our
workflow that we have in PPS.
Uh as I said, we want to work together.
So we have one
uh common access point on our website.
Um
so there is a web
uh form that you can fill in for a
project request. And then when these
projects come in, we see all these. We
have them they come into our database
and we look at that in our in the
management group. And the management
group consists of all the heads of the
different labs. So then we can discuss,
"Okay, we this researcher want to have
this protein. What is it? Who can help?
Where should this project go?" And then
we distribute
uh the projects to the different
platforms.
Uh and as I said, it depends very much
on the the proteins. The the properties
of the actual protein where uh
which platform the project should go to.
And here again are listed all the
different expression systems that we are
working with.
We also have two uh
so-called gateway uh
modules.
Uh
they are both located in Lund and these
are then very much aimed for
um
for uh production of proteins with uh
deuteration. That's directed towards the
ESS.
And we also have one gateway module
called molecular chaperones and these
are proteins that could then be uh
intended for for example for
co-crystallization.
Uh
so antibodies and different fragments,
etc. So
they are kind of specialty
uh modules.
So and then the work is done in the four
different nodes.
And at the end we also perform, as I
said, quality control of our proteins.
We all all of us do that and then we
deliver to our users.
So we have six expression systems, two
gateway modules, and we perform
purification and quality control at each
of the nodes.
Now, when it comes to a quality control,
quality assessment of the proteins, we
have agreed uh between us that we want
to focus on three
important things that are really crucial
for a protein to be of good quality.
Uh
the first one is purity.
Uh and purity can be assessed by a
Coomassie stained gels.
This is quite standard and quite simple,
but in a gel you can see
uh
how your protein looks and how pure it
is. So, that's a
that's an important thing to check for.
The second thing is identity of the
protein. So, all the proteins that we
make, uh we also send for mass
spectrometric analysis to verify that
the protein is actually what we believe
it is.
Uh there are several different ways that
we can can do that. Uh
either you can run a protein in in
intact mass, I mean the whole protein to
get the mass of the whole protein. You
can do that with smaller proteins at
least.
Or when it comes to larger proteins,
it's better to do tryptic digests and
then analyze
the the peptides.
And I'll show you one example of that
here where we
uh all the the green peptides here were
identified in a mass spectrometry
experiment. So, we could see that this
is clearly the protein that we intended
to produce that we have here. So, we
verified the identity.
The third thing, which is also very
important, which is sometimes a little
bit forgotten maybe, uh that you have to
check that the protein is the right
conformation and that it is a
preparation of mono dispersity so that
you don't have a lot of different
molecular forms or you have aggregated
proteins. You really want to see a nice
sharp single peak in an experiment like
this.
So that you don't have several different
peaks that could that could indicate
that you have some maybe aggregation or
so. So we always aim for that. And this
can be checked by size exclusion
chromatography or other analysis that
also involves separation by by size.
And we have said that either we I mean
we often have
SEC size exclusion chromatography as a
second purification step and then we
know that we have only pulled the
fractions so that then gives this sharp
peak.
But if we for some reason don't have
that purification step, we also we say
that then we need to do this analysis in
another way.
So all these three aspects are of course
important to know that the protein is of
good quality.
Okay and then this slide shows that the
proteins that we have produced and
delivered, they are used for many
different areas.
I think many people maybe are thinking
about structural biology when you think
about recombinant proteins and protein
purification.
We see of course that many of our users
do that.
Crystallization
but maybe nowadays more even more common
to use cryo EM.
And
some part of our proteins of course go
into structural biology but definitely
not the most anymore. So they are used
for many other things as well.
They are used for different types of
biophysical and biochemical
characterization, different methods.
They can be
uh used for drug or vaccine development
or to develop antibodies or check the
antibody the binding of antibodies, etc.
Uh then for the development of different
uh technologies or methods,
uh ELISA, for example, we produce
uh quite a few antigens for
for
uh for ELISA diagnostics, for example.
And then the proteins are also used for
assay development and screening
or in cell cellular experiments. We
don't produce anything for clinical use,
so it it's uh only for
for research use, the proteins that we
produce.
But there is a a big variation in uh in
the use of our proteins.
Okay, some numbers. Uh
these are numbers from the first 4 years
where PPS existed and worked together.
So to the right here, we have the total
number of projects and PIs.
Uh this is then from the old labs
combined.
So you see the applied project for each
of the four first years years here.
So you see applied projects, completed
projects,
and then the number of researchers, PIs,
with applied projects and finished
projects.
And the last bars here are for delivered
batches. How many protein
batches that we actually delivered from
the different labs in total.
Uh and if you sum this up for the
different years, uh we have produced
more than 1,400 proteins so far uh from
PPS.
Uh I should mention then that around 50%
of that is produced in E. coli.
Uh
E. coli is uh
uh still quite a popular system and uh
they are also quite fast.
So they can produce more proteins that
several of the other platforms can.
But again, it depends on the nature of
the protein whether it's possible at all
to produce in E. coli. Not everything
will be. So
there again, it's nice that we have
these complementing systems so that we
can
help more researchers with their
proteins.
And down here to the left I put in the
numbers for project applications from
companies and from from abroad from
other universities not in Sweden.
And we we also see an increase of the
projects coming from these
players which is of course very nice.
So we see a nice development and we know
that we have helped many researchers so
far and as I said we try to keep this
up. Keep this going.
Also for the future.
And the way to get access to our
services
you make a project request on our
webpage.
And here are some you can find on the
webpage details of what it is you you
need to enter into the form when you
make a project request. So it's it's
about the protein.
And what you want help with
and some other things.
And of course this is not a binding.
It's not that you have to do it
have to make the production. So if you
have if you're interested and you want
to get more information or you want to
discuss a project before you actually
make kind of an order. This is the way
to start because when we have got the
project request we can also look into
it. We can discuss it with you
and see what will be feasible and what
we want to do and then we will give you
a
quote or a price estimate for the work
and then you will decide whether whether
we should then
go for the project or not. So
sending in a project request it's not a
binding thing. It's not that you have to
do it afterwards but it's a it's a good
starting point for
for coming in contact with us so that we
can discuss your project.
Okay, so that was very general about
what PPS is
and what different expression systems we
have
within us.
Now I have one slide for each of the
expression systems. So this is slightly
more detailed.
And then I start here with the E. coli
production which I already said that we
have in two places both in Umeå and at
the Karolinska.
Uh
So they work with some many different
vectors and cell strains. They can
perform
small scale screening. They can make NMR
or isotope labeling for example quite
easily in E. coli.
And this expression system is a
comparatively cheap and fast. So if you
have a small protein or a simple protein
or I mean you can also make domains of
larger proteins for example.
So if you can if you can design your
protein in that way it's a it's a good
system to start with because it's it's
quite cheap. But
and fast. But of course it's not always
possible to have your protein expressed
in E. coli.
If if the protein has several disulfides
they can also work with periplasmic
expression.
So it it enable to to get the disulfide
bonds formed in the correct way. So they
have some tricks to do
things in different ways.
They also have set up
the incorporation of non-natural amino
acids, which could then be used for
different labeling, etc. So this is also
something that they can offer as a
service
to do that.
And the next system is yeast. And
the system they are working with, this
is here in Gothenburg. They work with
Pichia pastoris,
which is a eukaryotic cell, but it's
quite simple.
It can make post-translational
modifications, and it can fold proteins,
complex proteins in a in a better way
than E. coli. So
this is a system that can be used if E.
coli doesn't really work out.
And
yeast, Pichia,
has the advantage that you it's quite
inexpensive to grow, and you can get
very high cell densities, and they're
working with a very strong promoter. So
you can have a lot of cells and get a
lot of protein produced when you when
you induce the production.
They work with secreted proteins,
but these cells are also suitable for a
large variety of eukaryotic membrane
proteins. So this is also a platform
that can be used for for membrane
proteins, which are more tricky
in
in general to make, but these cells
could be a good starting point.
Again, they can do isotope labeling for
NMR in these cells.
And uh the way they work is that they
make if they get a request, they make a
stable cell line or or clone before the
product that produces the protein and
then they can store that and use that
again. So, they can make several batches
without having to start from the
beginning.
So, that was a little bit about that.
Oops.
And then I turn to the insect cells uh
which is then done in Lund by Wolfgang's
group.
Uh
this is also eukaryotic system uh that
is a little bit more Well, can work with
more complex proteins than than normally
uh E. coli.
Uh you can also get a very I mean, here
you make a virus uh baculovirus that you
infect you use to infect the insect
cells.
Um
so, it has some start
uh
it's start up as I cost and work to do
the virus uh but then of course, you can
produce the same thing again with the
same virus.
This is good for production of mammalian
cytosolic proteins, not so much for
secreted maybe, but
like intracellular and different types
of enzymes etc.
This could be the system of choice.
And the next system is the mammalian
cells which is the more the most complex
uh cells of course
uh in that we have access to in PPS.
Uh
we We are two labs doing this at at KTH
and here in Gothenburg. And we both work
with the mainly CHO and HEK cells. These
are hamster cells and human cells. So,
we have both these cell lines going in
our labs.
So, we work primarily with transient
transfections uh
at least for making medium batches of
protein when you don't need too much. If
you need more, you may be able to to
want to make stable cell lines or
clones.
But that's not so often needed any
longer as if you don't need too much of
protein.
Uh we work with adherent or suspension
cell cultures. We also have the ability
to grow cells in bioreactors for larger
batches.
Uh and then grow the cells with
perfusion.
So we can grow cells in many different
formats. Uh
we also have the possibility to work
with different cell lines
uh
that will make different patterns of
glycosylation.
Uh
so if the glycosylation, if you have a
glycoprotein and the glycosylation is
important, then
of course these are the cells to use and
we are able to modify that
in uh
in different ways.
And one thing here which may be
important for some of you is that uh
when you work with mammalian cells, you
don't have any endotoxin contamination
in the protein preparations. And that
could of course be important when you're
doing say immunological experiments or
other biological experiments where where
the endotoxins can make a
can be a problem. So then this is a good
system to use.
Mm and then the Umeå lab, as I said
before, they have also set up plant cell
suspension cultures for protein
productions.
Uh
so there are
um
this is not not the most common thing to
do, but uh
it's also one eukaryotic system then
that you can use.
Uh
also again free from endotoxins.
Um yeah. So, this is an alternative
sometimes.
Okay, and the last system is then
cell-free. And
this is done also here in Gothenburg at
the NMR center.
And this is then just made without
cells, exactly as the name says. Uh you
just mix in a tube the the plasmid DNA
with the gene, and then you mix it with
an E. coli lysate. You mix um you
just wait. This is a very quick system.
And again works for more simple uh
proteins
cuz it's E. coli based in a way.
Uh but here also it's quite easy to
check
uh or or modify
uh culture condition or not culture, but
um
reaction conditions like pH,
temperature, buffer, redox conditions,
etc.
So,
they have the possibility to do this in
in
parallel for trying out different
uh conditions for the production of the
protein.
Okay, so those were the expression
systems. And here again I will mention
the gateway environments. Uh
one is for making protein duration of
protein
uh for neutron molecular molecular
crystallography
or use at ESS.
And the other one is then for to aid in
crystallography crystallography as I
said.
Uh for example, making antibody
fragments that you want to have your
protein in complex with, etc.
to aid for crystalli- crystallization.
And these platforms are located in uh in
Lund with Wolfgang.
Okay, so that was a an overview of uh of
PPS, what we can do.
Uh I will tell you a little bit more now
about my lab uh and the core facility
that that we have here in Gothenburg for
production in mammalian cells.
Uh
so uh we have been working as a core
facility here at the Sahlgrenska Academy
for for 20 years by now. And what we
have focused on is the production of
complex proteins and for example glyco
proteins.
And we can culture cells in many
different formats
uh both adherent and suspension
cultures.
Most of the time we use shake flasks,
but we can also make bioreactor cultures
for for even larger batches.
Uh
we use Chinese hamster ovary suspension
cells.
Uh
we actually started out with that. When
we started as a core facility, we were
working very much with CHO cells.
Uh this is also what is very much used
in biopharmaceutical industry for
production of of recombinant
biopharmaceuticals.
So, it's a it's a cell line which is
um approved for for that type of use,
also.
Uh but over the years
uh these HEK293 cells have become and
more and more developed and they are
very good at producing high amounts of
proteins. So, so we are turning more and
more
to to these cells instead. But we still
have the possibility of doing it in CHO
cells if that is needed for any reason.
It also happens sometimes that we get
the request just to deliver cell uh uh
cell mass. Not not cells producing
specific proteins, but just to get a lot
of cells of some kind. So,
that we can also help with.
Sometimes people want to have
a lot of cell mass for different types
of
as a as a starting material for these
different types of research experiments.
So, we can also just grow up a lot of
cells.
So, here are some pictures from our
labs.
This is
known probably to most of you quite
common cell culture facility.
What is maybe a bit more
unusual is the use of these bioreactors
that we have. We have 3 L vessels.
Where we can also culture then
suspension cells.
Um
And here is a slide showing a
perfusion culture. What we do then is
that we have a bioreactor with a
stirrer. We have electrodes for checking
pH, dissolved oxygen, and temperature
continuously.
And you keep control of these
parameters to keep cells in a good
conditions. And this way you can keep
the cultures for longer time because we
have better control and also then
because we have this perfusion meaning
that we have a cell
um
cell suspension here in the vessel in
the middle in the actual bioreactor.
And then we feed in medium.
And we feed out used medium spent medium
then containing the protein of interest
especially if it was produced as a
secreted protein. It will end up in the
supernatant, and we can harvest
continuously also.
And then we have something called a spin
filter in the middle here, so that we
keep the cells in the reactor and only
harvest the solution, the spent culture
medium.
And in this way we can get very high
cell densities and in this also then a
good production of the protein.
And we can do this
uh
I mean, you can keep the cells for some
time, maybe
a couple of weeks, and harvest up to 20
L
from a reactor like this.
Okay, so that was a bit about the
production. We're not of course uh not
only doing it in bioreactors, we also
make a lot of shake flasks, but then
after that we also need some
post-production processing.
Uh
first we make a concentration if that is
needed, especially if we start with 20
L, it's better to make uh concentration
first. But then we work a lot with these
column chromatography, which we all of
us do at the different platforms of PPS.
We we use uh His-tag purification, size
exclusion, ion exchange, and other
things as well. So, this is I show you
pictures now from our lab from my lab,
but of course that is something that we
do all of us.
And then different types of analysis for
to look for
uh yield and purity of of the protein
that we produced.
And again, as I said, the the quality
control.
And then we deliver to the to the
researcher.
>> [clears throat]
>> So, this slide shows uh one specific
example where where
where we generated one um
it's a viral protein. It's actually a
receptor-binding domain of the
SARS-CoV-2 spike protein
that we produced at
uh our lab, and we were then
for a research project, we wanted to
produce the same protein but uh with
different types of glycosylation. So, we
tried different ways of modifying the
glycosylation.
>> [clears throat]
>> So, we use some variants of CHO cells
and also some variant of 293 cells.
Another way of
uh manipulating the glycosylation is to
add in
inhibitors of glycosylation. For
example, swainsonine is very well-known
compound that you can use to inhibit
to inhibit the mannosidase 1.
Uh and then in this way you will get
high mannose N-glycans on your protein.
And this is good if you want to remove
them afterwards because this enzyme can
can easily remove them. It's not so easy
to remove the complex N-glycans, but the
high mannose it's easier.
And this gel here shows you the
different uh migration. It's I mean,
this is the same protein but produced in
different cells or with or without this
inhibitor swainsonine. And you can see
uh
here for example, in the CHO cells it's
a very broadly migrating band. So, you
get quite a diverse glycosylation.
But [clears throat] then in the other
other examples here show that
uh the protein is more sharp. It's a
sharp band, but they also migrate
differently. So, this indicate that the
glycosylation is actually
different in the different samples. So,
it's the same protein but different
patterns of glycosylation.
So, if
if that is of interest for for your
protein, this is something that we can
also discuss and help you with to find a
way of doing what you want.
Okay, so that was a little bit about uh
my
lab Uh
which is
the mammalian protein expression
platform.
And I will now end this presentation by
giving you two examples of projects that
we have worked with also in the in my
lab.
And the first one was a project that we
got from from Wolfgang. It's for the
production and purification of the main
glycoprotein from Ebola virus.
The EBOV GP.
>> [clears throat]
>> So this is quite a large protein. It's
the main glycoprotein of the Ebola
virus.
It is a large protein as I said. It also
has a mucin-like domain which carries
numerous O-glycans. So this is the
sequence of the whole protein and in
gray here you can see what the gray is
the whole GP1
and the purple one here is the
mucin-like domain. So it's quite a big
part of the extracellular part of of
of this protein.
This is one gene but it's the protein is
then cleaved into GP1 and GP2.
And GP2 then is the bit at the end here.
This protein is then also forming
trimers which I will come back to.
So what we did we produced this Ebola
glycoprotein in 293 cells.
We did this by transient transfection.
With this reagent factor pro.
We harvested the cells in 96 hours post
transfection or I should say we
harvested the culture medium because
this was then produced as a secreted
protein.
And we did the first purification step
using the His-tag
on
cube indigo column.
And this then shows
the gels from the fractions from the his
purification.
Uh we eluted then stepwise with
increasing amounts of imidazole.
Uh and we could then see the different
fractions. We could see the the
different or we could see where the
protein ended up. So, this is a western
blot specific for the his tag.
And this is a coomassie gel.
>> [clears throat]
>> Uh and this gel was run with DTT,
meaning that the
because I I didn't say that, but the GP1
and GP2 is linked together by a
disulfide bond.
So, if you add in DTT, this will be
reduced and then you see
uh the two parts of the protein falling
apart. And so, this is GP1 and this is
GP2 down here.
And in the western, you mainly see GP2
because this is where the his tag is
located at the C terminus. So, you don't
really see much of GP1. Could even be
some uncleaved maybe up here.
So, this was the first purification
step. So, we uh pooled all the fractions
with which contained the glycoprotein
and then proceeded with the second step,
which was then a size exclusion
chromatography.
And then it looked like this.
So, it's not only one
uh obvious peak here, but three or maybe
even four different peaks.
So,
uh
Yes. So, and then we ran these fractions
on on gels to try to figure out what the
different peaks are.
>> [gasps]
>> And you can see here the the how it
looks in a
coomassie gel.
This is now non-reduced, meaning that
you we only see one band because the GP1
and GP2 two will be uh still linked
together.
So, this is what you see in peak one.
And the second peak here, and there's a
small one if you remember
the one here
looks like this. So, they all look the
same.
So, they look the same on the gel,
but
in the size exclusion, they migrate
differently. So, there must be a
difference
why they come out on time points from
the column.
The third peak, the one which is oops,
sorry, the latest one
actually runs like this on a gel.
So, this is
that was also then the question what
does what that is.
So, we delivered this to Wolfgang, and
in his lab they made this OmniSec
analysis,
which is a kind of a SEC mouse where you
look with different detectors
to
to determine the
the molecular weight
and also determine the
the composition of the protein because
this instrument can also analyze the how
much of the mass that you see is
protein, and how much of the mass that's
actually carbohydrate. Remember that
this is a gly- glycosylated protein, and
it's quite extensively glycosylated. So,
uh
uh this and you will see that in the
next slide because this is then the
result of the OmniSec analysis.
There is a lot of information here,
but this is then the the red here is the
the peak, so to speak, from the from the
SEC column.
Uh
and the
um
Then you get the information about the
molecular mass, the weight of the
protein that comes out that in these
different time points.
And this is what you see here with this
brownish line.
Uh
and then you see the composition because
this the blue one here is the the part
it it represents the percent of
of the the weight which is actually
consisting of protein.
And the green one is then
uh what consists of carbohydrate.
You can see that this changes over time.
I mean there will be a varied
glycosylation.
Uh
so the the carbohydrate content over
this peak is actually decreasing. So
there is a In the end, if you pull this,
there will be a mixture of different
compositions.
But anyway, from the molecular weight,
you can say that this is then peak one
and from the molecular weight, you can
say that this is this corresponds to the
trimer, the trimeric form of the Ebola
glycoprotein. And it has a glycosylation
content of well, approximately 40%.
And from the mass of peak two,
uh which is lower than peak one,
you we concluded that this is a
monomer of the glycosylated
uh glycoprotein.
So we had
uh if you remember how it looked in the
in the chromatogram, so the main peak
here number two is actually the monomer
and the smaller peak here is the trimer.
And it turned out that the
uh
peak three here did not really have any
carbohydrate. So that's a
non-glycosylated form of the monomer.
So we get different versions of of the
same protein when producing it in this
way.
Uh
okay, and this protein we delivered to
Wolfgang and he is using that in a
collaboration in this EU project called
Vigilant, which is then a Well, maybe
you can correct me now if I'm wrong,
Wolfgang, but I think it has to do with
protease cleavages of of these viral
proteins.
>> Exactly, and this to develop inhibitors
against that.
>> Mhm, yes.
Mhm, okay. So, that was my first
example.
And uh, the second example
uh, is a protein from
TBE, tick-borne encephalitis virus.
It's the non-structural protein one from
this virus.
Uh, this is a project that we had
together with Professor Thomas Bay
Strand here in Gothenburg.
Uh, they are working a lot with
serological
diagnostics. Uh,
and
I mean, the main protein that is used
nowadays, as I understand it, for the
diagnosing
TBE,
is the envelope protein.
Uh, but for different reasons, this
doesn't always work so well. So, they
were looking for on an alternative
antigen for for their serology.
So, we set out
to produce this NS1, which is the
non-structural protein
uh, in in the virus. We produced it
within 293 cells, and we had a His tag,
so we could produce purify it using
IMAC.
And this is a gel then of of the protein
after this one-step purification. You
can see it's not super pure,
but
uh, for for this type of analysis, using
it as an antigen in an ELISA, this
is often enough. So, they proceeded to
try it in their ELISA anyway.
They also made
an AlphaFold model of this NS1 protein.
So, then presumably it looks like this.
They also did some
epitope detection by PepScan analysis
looking where the antibodies bind, which
peptides the antibodies bind to. And
they could have identified two different
epitopes
from this analysis, which are then
located here in these domains.
And they continued
and analyzed
both serum and cerebrospinal fluid from
69 patients in this study.
And they analyzed both these
liquids then for IgG and IgM antibodies.
And what they could find was that
they got a good activity of antibodies
to NS1 in both serum and cerebrospinal
fluid.
And
their conclusion was they also checked
of course
specificity
and so on. But their conclusion was that
this is a very good antigen and they are
proposing that
this should be more included in routine
diagnostics of TBE in the future.
Okay, so I'm coming to the end. This is
a picture of all of us working in PPS
when we met in Lund last year.
And with that, I want to thank you for
listening to my presentation. I want to
thank the people who have been involved
in the work both in PPS and uh group in
the MP core facility, and also the
researchers for for their projects that
they gave to PPS.
So, thank you, and I'm open to
questions.